Yes, I can explain. And in fact, we can basically speak the same "language", as I use SuperDuper! for my weekly backups, for both of my Macs, to two external drives (SSDs, in my case). Just like Carbon Copy Cloner (CCC), SuperDuper! makes bootable backups/clones. The two differences between the two programs are 1) cost (SuperDuper! costs $27.95, while CCC costs $39.95), and 2) CCC backs up the (hidden) Recovery HD partition, whereas SuperDuper! does not. But, for me, that is not an issue, as 1) that partition gets created again on a clean installation of the Mac OS, 2) there are other ways of re-creating it, and 3) I have a much more robust Disk Maintenance program in TechTool Pro, and thus I really do not need Disk Utility being available through the Recovery HD partition.
OK, back to your question. If I have a "severe" enough disaster (or doing it once in a while), after saving some important stuff since my last backup (like transactions in Quicken, software updaters, etc.), I boot the applicable Mac from my most recent SuperDuper! backup. On both of my Macs, and on the backups, I always have two copies of the latest "Install macOS Sierra" files available (in fact, given that OS 10.12.4 came out earlier today, I'll download it soon for both of my Macs).
I next run Disk Utility on the backup to Erase and Format (I do not need an additional partition) the internal SSD on the Mac. I then launch the "Install macOS Sierra" file (on the backup), and do a fresh, clean, and "virgin" installation of that version of Sierra. So, for example, if I were to do that right now, it would be OS 10.12.3.
Finally, once that installation completes, one is offered the opportunity to "migrate"/copy stuff from a backup or another Mac. So, that is what I do, "migrating"/copying all the needed "stuff" (including applications) from that most recent SuperDuper! backup. I then re-boot my Mac, and I am back in business (I do have to re-create the TechTool Pro eDrive, and also "apply"/install any of the stuff I saved since the last backup (mentioned above))".
I actually had to do all of that about 2 weeks ago for my mid 2013 13" MacBook Air, as while we were on vacation in the Canary Islands, I mistakenly deleted all my EMails in my In Box (I use Outlook 2016 as my EMail client). Fortunately, I had not received any critical EMails between the last SuperDuper! backup I had done 4 days earlier, and the day of the "disaster".
Note that given all the disk cleaning/maintenance/repairs steps I do prior to the backup, those backups are basically "pristine".